Microbiology Laboratory Turkey

Mikrobiyoloji Ile Ilgili Tüm Konuların Kısa ve Öz Anlatımları. Microbiology Lab Information.

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infection etiketine sahip kayıtlar gösteriliyor. Tüm kayıtları göster
infection etiketine sahip kayıtlar gösteriliyor. Tüm kayıtları göster

25 Ocak 2019 Cuma

Ocak 25, 2019

Helicobacter pylori

Helicobacter pylori

Morphology and Habitat: 
Helicobacter pylori are spiral-shaped (or sometimes straight), Gram-negative bacilli approximately 0.5 x 3.0 micrometers in size. They are motile by means of 4-6 sheathed flagella that are attached to one pole (lophotrichous). H.pylori lives in the mucosal lining of duodenum and stomach.

Nomenclature: 
Originally, the organism was named Campylobacter pyloridis because it was structurally similar to other Campylobacter species. C.pyloridis was later renamed Campylobacter pylori and finally named Helicobacter pylori in 1989. Australian physiologists Robin Warren and Barry Marshall were awarded the 2005 Nobel Prize in medicine for their research in the early 1980's showing that peptic ulcers were primarily caused by bacteria not stress.  


Cultural Characteristics: 
It is microaerophilic and grows well in fresh, moist medium with humidity at 37oC. It is cultivated on chocolate or blood agar and incubated for up to 5 days. It is catalase, oxidase, urease and phosphatase positive. 
Helicobacter pylori on Blood Agar


Pathogenesis: 
Source of infection: Persons suffering from H.pylori infection shed the bacilli in their feces that might contaminate food and drinking water.  

Mode of infection: 
H.pylori is believed to be transmitted orally food or water. It could be transmitted from the stomach to the mouth through gastro-esophagal reflux. The bacterium could then be transmitted through oral contact. About 10% of children get infected between the ages of 2 and 8. The stomach is protected from its own gastrc juice by a thick layer of mucus that covers the stomach lining. H.pylori takes advantage of this protection by living n the mucus lining. The antrum of the stomach is a region of moderate acidity where H.pylori usually prefers to colonize first. The bacterium uses its flagella and sipral shape to drill through the mucus layer in the stomach. It is known to produce some adhesions that help it adhere to epithelial cells of mucosa. It escapes the deleterious effect of HCl in the gastric juice by producing abundant of urease. Urease converts urea, which is in abundant supply in the stomach (from saliva and gastric juices), into bicarbonate and ammonia, which serves to neutralize the acidity.
CO(NH2) 2 + H+ + 2H2O ---urease---> HCO3- + 2(NH4+)



Ammonia production from urease activity is toxic to mammalian cells. Epithelial cells undergo vacuolation because of urease acitvity. Other products of H.pylori, including protease, catalase, and phospholipases A2 and C cause weakening of the mucous layer of the GI tract and damage to surface epithelial cells. Lipopolysachaaride (LPS) may interfere with protective function of mucus layer and make epithelial cells at the surface vulnerable to acid. H.pylori is the only bacterium that stimulates pepsinogen secretion. 

 Body's natural defenses cannot reach the bacterium in the mucus lining of the stomach. Neutrophils and killer T cells cannot reach the infection, as they cannot easily get through stomach lining. Cytokines are produced that attract and activate inflammatory cells. These cells spill their destructive compounds (superoxide radicals) on stomach lining cells. It is the inflammaton of the stomach lining in response to H. pylori that causes peptic ulcer. Within a few days, gastritis and perhaps eventually a pepitc ulcer results. Gastritis is an infiltraton of the tissue with lymphocytes and plasma cells. Duodenal ulcers are associated with chronic superficial gastritis in the gastric antrum. Most gastric adenocarcinomas and lymphomas occur in persons with current or past infection with H. pylori.

Laboratory Diagnoss: 
There are invasive and non- invasive methods to diagnose H.pylori infections.


Invasive methods include endoscopy of a patient, during which biopsies are taken from multiple sites in the oesophagus, stomach, and duodenum. The biopsy specimen must be transported to laboratory immediately in sterile saline. The sample may be refrigerated in case of delay in transportation. When there is a delay of five hours of more, Stuart's transport medium can be used.   

The specimens are subjected to microscopic examination, culture and rapid urease test. The smears prepared from biopsy specimens are stained by Gram stain or Giemsa stain. The specimen is ground and inoculated on chocolate agar, blood agar or selective media such as Skirrow medium and incubated in microaerophilic conditions at 37oC. Rapid urease test checks for the presence of the enzyme urease in the biopsy tissue sample. The test is positive in as little as 10 minutes.  

Non- invasive testing includes culture from the stool specimen and urea breath test. In Urea breath test, the patient drinks a solution with C-13 or C-14 labeled urea with a meal. In an infected person, labelled CO2 is detected in the breath, which is measured with a beta counter. Other methods of testing include testing for antibodies in serum or saliva of a patient. ELISA can be used to measure IgG in serum.


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Treatment:
The best treatment is a triple therapy routine including bismuth subcitrate, metronidazole, and either tetracycline or amoxycillin or clarithomycin.





INSTAGRAM

7 Ocak 2019 Pazartesi

Ocak 07, 2019

HIV (Human Immune Deficiency Virus / AIDS Virus)

HIV (Human Immune Deficiency Virus / AIDS Virus)


→ 80-120 nm in size, single-stranded, enveloped, RNA virus is a retrovirus included in the group.
→ Construction of DNA synthesis from RNA virus which has reverse transcriptase and integrase enzymes. HIV, constantly change the genetic structure because it is a retrovirus. 
→ Ultraviolet radiation-resistant, 70% alcohol, soap and water washing (0.5% hypochlorite) is sensitive. It dies at 15-20 minutes in a chlorinated pool water. 30 minutes in temperatures of 56oc is based. The virus is highly resistant in dry and lyophilized form. 

Antigenic Structure 
  • Core antigen (P24 antigens) and antigens used in serological tests important.  
  • Envelope antigens (gp160 antigens) is a glycoprotein structure. It consists of two parts.These free surface occurring gp120 (surface = SU), gp 41, is embedded in the surface and the membrane (transmembrane = TM) glycoproteins. HIV gp120 to receptors on the cell surface is involved in adhesion and fusion. 







HIV, AIDS (acquired human Immuno Deficiency Syndrome = acquired immunodeficiency syndrome) is the causative agent of the disease. 



Diagnostic Methods  
Review Samples
  • Serological analysis or virus must be Venous blood samples for determination routine.  
  • Peripheral blood mononuclear cells receiving the treated blood sample with heparin or EDTA are required for virus isolation. HIV also plasma, serum, CSF, saliva, tears, milk, urine, genital secretions also be isolated from infected tissues such as body fluids or samples. All kinds of clinical samples taken during the implementation process and should comply with standard precautions, gloves should be worn.  
  • Taken for serological testing plasma, serum and other body fluids should be kept at 200C or -700c. If the virus or viral antigen in the sample then the samples must be stored at -700c aranacaksa. 
  • If you get good results from Virus isolation is desired sample should be taken immediately after.  






Serology: 
Difficult when producing the virus in the culture, and reliable, most ELISA method is used for diagnosis in terms of results to be made quickly. Because while sometimes false positive screening test results obtained by ELISA for the detection of antibody western blot confirmatory test for a definitive diagnosis is made.

4 Ocak 2019 Cuma

Ocak 04, 2019

Urinary Tract Infection (UTI)

Urinary Tract Infection (UTI)


Reddening caused by urinary tract infection of the urinary tract lining, and consequently cause irritation and pain, urinary disturbance and frequent blood is causing symptoms such as the need to urinate. If the infection spreads to your kidneys can become a serious health problem.

The urinary tract is one of the body's fluid waste products which produce and store urine. Normal urine bacteria (germ) is not.However, sometimes the bacteria enters the urinary tract outside the body and causes infection and inflammation. This is a urinary tract infection. Infection urethra (urethritis called state), kidneys (pyelonephritis name given situation) or bladder (a condition called cystitis) as appropriate. Cystitis is the most common type of urinary tract infection.

WHAT ARE THE SYMPTOMS OF URINARY INFECTION?
A urinary tract infection, reddening of the lining of the urinary tract, causing irritation, which may form part of the following symptoms:
- Side (abdomen), abdomen or pain in the pelvic region 
- Sub-pelvic pressure 
- the need for Frequent Urination 
- painful urination (dysuria) 
- Urine emergency exit needs 
- Incontinence (urine leakage) 
- Night of the need for frequent urination 
- Abnormal urine color 
- Blood in the urine 
- Strong or foul-smelling urine



Other Symptoms That Can Be Associated With Urinary Tract Infections Include:

- Pain in the side of the body 
- Fatigue 
- Fever 
- Shivering 
- Vomiting 
- Mental confusion






CAUSES Urinary Tract Infection?

Urinary tract infections, urinary tract and bladder that causes inflammation and entering the microorganisms (usually bacteria ) to occur.

More than 90 percent of cases cystitis, normally in the gut bacteria is from E.coli caused.





HOW Urinary Tract Diagnosed?
A urinary tract infection following tests are used to diagnose:
Urinalysis:  Red blood cells, white blood cells and examines urine for bacteria (number of white and red blood cells indicates an infection.)
Urine culture to determine the type of bacteria in the urine :  This is important to help determine the appropriate treatment.

Infection does not respond to treatment or if you have recurring infections, urinary be done in terms of the following tests to examine your way through disease or injury:


Intravenous Pyelogram (IVP):  After a special dye bladder, kidney, ureter and an array of X-ram is injected. (paint, helps you look better on X-ray).
Ultrasound:  A test that uses sound waves to create images of internal organs
Cystoscopy:  The urethra through a lens and a light source to see inside the bladder (cystoscopy) equipped with a test that uses a special tool.
CT Scan:  Body sections (such as strips) an X-ray field type (the typical X-ray is more sensitive)

Urinary Tract HOW IS IT TREATED?
Antibiotics are drugs that kill bacteria, used to treat urinary tract infections. Your doctor will choose the bacteria that cause you to enfeksiyonunları a treatment drug. Antibiotics are commonly used include:
- Nitrofurantoin (A preparation antibiotics that fight bacteria in the body) 
- sulfonamides (sulfa drugs - antibacterial are composed of sulfonic acid) 
- Amoxicillin (causes of death by disrupting the cell walls of bacteria) 
- Cephalosporins (both structural and antibiotics resembling penicillin its effects both) 
- Trimethoprim / sulfamethoxazole 
- Doxycycline (usually recommended for treatment of acne and infectious) 
- Quinolones (obtained from viable microorganisms that many antibiotic is obtained by chemical means as opposed to synthetic substances)
Adhere strictly to the instructions of your doctor while taking medication is very important. Antibiotics do not leave prematurely. If the infection is completely cured with antibiotic treatment, the risk of recurrence is high.