Microbiology Laboratory Turkey

Mikrobiyoloji Ile Ilgili Tüm Konuların Kısa ve Öz Anlatımları. Microbiology Lab Information.

Bu Blogda Ara(SEARCH)

MicroLab

Gram positive etiketine sahip kayıtlar gösteriliyor. Tüm kayıtları göster
Gram positive etiketine sahip kayıtlar gösteriliyor. Tüm kayıtları göster

22 Aralık 2018 Cumartesi

Aralık 22, 2018

Hemolysis Types

Hemolysis Types Blood Agar




Beta Hemolysis
Streptococcus pyogenes, or Group A beta-hemolytic Streptococci (GAS), and Streptococcusagalactiae, or Group B beta-hemolytic Streptococci (GBS) blood agar cultures display beta hemolysis. Beta hemolysis (β-hemolysis), sometimes called complete hemolysis, is a complete lysis of red cells in the media around and under the colonies: the area appears lightened (yellow) and transparent.


Streptolysin, an exotoxin, is produced by the bacteria which causes the complete lysis of red blood cells. Streptolysin O is oxygen-sensitive cytotoxin, secreted by most GAS, and interacts with cholesterol in the membrane of eukaryotic cells (mainly red and white blood cells, macrophages, and platelets), and usually results in β-hemolysis under the surface of blood  agar. Colonies of group B streptococci often have less pronounced zones of beta-hemolysis than do other beta-hemolytic streptococci.

Alpha Hemolysis
Streptococcus pneumoniae, Streptococcus salivarius, viridans are referred to collectively as viridans streptococci, a name derived from viridis (Latin for "green"), referring to the green pigment formed by the partial, α-hemolysis of blood agar. Encapsulated, virulent strains of S. pneumoniae often forming highly mucoid, glistening colonies (production of capsular polysaccharide) surrounded by a zone of α -hemolysis. When α-hemolysis is present, the agar under the colony is dark and greenish. Streptococcus pneumoniae and a group of oral streptococci (Streptococcus viridans or viridans streptococci) display alpha hemolysis. This is sometimes called green hemolysis because of the color change in the agar. Other synonymous terms are incomplete hemolysis and partial hemolysis. Alpha hemolysis is caused by hydrogen peroxide produced by the bacterium, oxidizing hemoglobin to green methemoglobin. Alpha-hemolytic colonies with depressions in their centers are characteristic of pneumococci.  Some strains produce high ammounts of capsular polysaccharide which gives glistening appearance.





Gamma Hemolysis
If an organism does not induce hemolysis, the agar under and around the colony is unchanged, and the organism is called non-hemolytic or said to display gamma hemolysis (γhemolysis). Enterococcus faecalis (formerly called Group D Streptococci) displays gamma hemolysis.
E. faecalis typically exhibits gamma-hemolysis on blood agar, but some strains are alfahemolytic or even beta-hemolytic (a plasmid-encoded hemolysin, called the cytolysin). 

5 Kasım 2018 Pazartesi

Kasım 05, 2018

OPTOCHIN TEST

OPTOCHIN TEST 

Susceptibility to optochin (ethylhydrocupreine hydrochloride) is a simple and reliable method of differentiating Streptococcus pneumoniae from other alpha-haemolytic Streptococci.


TEST PRINCIPLE
The optochin test detects an organisms susceptibility to the chemical optochin ethylhydrocupreine hydrochloride). The chemical tests the fragility of the bacterial cell membrane and causes Streptococcus pneumoniae to lyse due to changes in surface tension.
The optochin test is widely used in the form of filter paper discs, impregnated with ethylhydrocupreine hydrochloride which are applied directly to inoculated plates before incubation.

REAGENTS AND EQUIPMENT
Filter paper discs impregnated with 5µg of ethylhydrocupreine hydrochloride
Bacteriological straight wire/loop (preferably nichrome) or disposable alternative

Quality Control Organisms
Positive control: Streptococcus pneumoniae 
Negative control: Streptococcus viridans 


METHOD/PROCEDURE AND RESULTS
Pure colony
  • Streak a blood plate with the organism to be tested
  • Place an optochin disc in the centre of the inoculum
  • Incubate at 35-37o C for 18-24h in 5% CO2
  • Examine for zones of inhibition 

Specimen

  1. Streak the specimen onto a blood plate
  2. Place an optochin disc on the edge of the primary inoculum
  3. Incubate at 35-37oC for 18-24h in 5% CO2
  4. Examine for zones of inhibition 


Positive result 
Zone of inhibition of ≥5mm radius from  the edge of the disc eg test  organism is S. pneumoniae
Negative result 
No zone of inhibition, or a zone <5mm  radius from the edge of the  disc eg test organism is not  S. pneumoniae.


PRECAUTIONS/LIMITATIONS OF PROCEDURE
Some “viridans” streptococci may produce a small zone of inhibition. Equivocal results should be confirmed using the bile solubility test or by the use of a commercial kit.
False-negatives may be reported if cultures are incubated in high concentrations of CO2. 
Occasional strains of optochin resistant S. pneumoniae have been reported.

2 Kasım 2018 Cuma

Kasım 02, 2018

Basitracin Testi (Bacitracin Test)

Basitracin Testi (Bacitracin Test)

Basitrasin testi, A grubu beta hemolotik Streptococcusları diğer Streptococcuslardan ayırt etmek için yapılan bir testtir. 
Testin yapılış tekniği; 


➤Streptococcus şüphesi olan koloniler öze ile alınarak glikozlu buyyonda, homojenize edilir.  
➤Buyyondaki karışımdan eküvyon yardımıyla alınıp %5‟lik kanlı agar besiyerine homojen bir şekilde yayılır. 
➤0.04 ünitelik basitrasin emdirilmiş bir disk, besiyerinin ortasına yerleştirilir.  
➤Besiyeri, 37oC'de 18-24 saat etüvde inkübe edilir. 
➤Disk etrafında zon oluşması, bakterinin basitrasine duyarlı olduğunu ve büyük olasılıkla A grubu beta hemolotik Streptococcus varlığını gösterir. 
Basitrasin testinde disk etrafında zon oluşumu 



INSTAGRAM
FACEBOOK 
TWITTER

26 Ekim 2018 Cuma

Ekim 26, 2018

BACTERIA

WHAT IS BACTERIA

A bacterium is a single-celled (unicellular) microorganism that does not have a nucleus or any other membrane-bound organelles. Bacteria are sometimes called 'prokaryotes.' In Greek, 'prokaryote' literally means 'before the nut' (where 'the nut' is the nucleus.)

Bacteria adapt to become well-suited to their environments, and therefore come in many shapes and forms. However, they all have a few parts in common.
BACTERIA
  • Capsule: A protective, often slimy, coating, often of sugars, that helps to protect the bacterium. It also makes bacteria virulent. This means the bacteria is more likely to cause disease, since it aids the cell in survival against attack. For example, the bacteria may survive an attack from the human body's immune system.
  • Cell wall: In bacteria, the cell wall is usually made of peptidoglycan, a protein and sugar compound. This structure gives the cell some rigidity and protection.
  • Cell membrane: As in most cells, the bacterium's plasma membrane acts by coordinating the passage of molecules into and out of the cell.
  • Cytoplasm: Again, as in many cells, the cytoplasm serves as a medium through which molecules are transported, as well as a system to maintain conditions (like temperature and pH) that are best for the cell.
  • Ribosomes: The main site for the bacterium's protein synthesis.
  • Nucleosome: A basic unit of chromatin, which won't be covered in this lesson.
  • Nucleoid: This is the region where the bacterium's DNA is located. Again, it's not the same as a nucleus because it's not surrounded by a membrane.
  • Flagellum: In many bacteria, a flagellum is present, and is the means by which the cell moves around.

Classification
Because bacteria are so diverse in both form and habitat, biologists have struggled with their classification, (also called their 'taxonomy.') For many years, bacteria were called 'monerans,' and placed in a kingdom of the same name. Although you still might hear bacteria referred to as monerans, it's not a term currently accepted among biologists.
Life is now classified into three domains; a domain is a taxonomic level that is higher than a kingdom, and based on an organism's DNA. Bacteria is one of these domains, while the others are eukarya, composed of organisms that have nucleated cells, and archaea, composed of unicellular prokaryotes, many of which have evolved to exploit extreme environments. Organisms in the archaea domain were originally considered a type of bacteria - known as archaebacteria - but scientists have since reclassified them. In this image, groups of archaea are indicated by green lines, and bacteria are in blue. Red lines indicate eukaryotes.



How we group bacteria
Scientists try to make sense of the sheer number and diversity of bacteria by grouping them in various ways. Here are just a few ways that are accepted in the scientific and medical communities:
Shape: Bacteria are usually one of three shapes. Cocci are round; bacilli are rod shaped; spirilla (also called spirochetes) are spiral.




INSTAGRAM
FACEBOOK 
TWITTER

24 Ekim 2018 Çarşamba

Ekim 24, 2018

STAPHYLOCOCCUS SPP. (ENGLISH)

STAPHYLOCOCCUS SPP.

Staphylococcus bacteria are pathogens to both man and other mammals. They are gram positive bacteria that are small round in shape (cocci) and occur as clusters appearing like a bunch of grapes on electron microscopy.

Coagulase Reaction
Staphylococcus were earlier divided into two groups on the basis of their ability to clot blood plasma. The coagulase-positive staphylococci constitute the most pathogenic species S aureus. The coagulase-negative staphylococci (CNS) are now known to comprise over 30 other species. It is the CNS that is present as harmless bacteria on skin but some of these may cause infections as well.
These days coagulase reaction is no longer used to classify S.aureus. This is because coagulase is a marker for S aureus but there is no direct evidence that it is a virulence factor. Nevertheless, the term is still in widespread use among clinical microbiologists.
Proteins and Virulence
S. aureus expresses certain proteins and polysaccharides on its surface. This is correlated with virulence. Virulence is the effect of many factors expressed during infection. The bacteria also produce certain toxins. In the body antibodies neutralize staphylococcal toxins and enzymes.

Taxonomy and Naming Conventions
At least 30 species of staphylococci have been recognized by biochemical analysis. This is especially so with DNA-DNA hybridization. Of these, 11 are found in humans as harmless bacteria on skin, in the nose and throat. These can cause disease and infections in certain situations.

Identifications Under The Microscope
These bacteria are Gram positive (+) cocci about 0.5 – 1.0 μm in diameter. They are present as grape like clusters. They may also occur in pairs and occasionally in short chains. The clusters arise because staphylococci divide in two planes. This clustering helps to distinguish staphylococci from streptococci, which usually grow in chains.
Growing on solid medium colonies of S. aureus these appear as golden clumps.

Catalase Test
This test helps to distinguish between streptococci (that is catalase-negative) and staphylococci (which are catalase positive). On an agar slant or broth culture of the bacteria several drops of 3% hydrogen peroxide are applied. Catalase-positive cultures bubble at once. This cannot be done on blood agar since blood itself will produce bubbles.

Identification of Staphylococcus aureus
After sample from the lesions are taken, they can be stained with Gram stain. S. Aureus is Gram positive. The organism from the clinical specimen from blood culture or pus is then streaked over solid media such as blood agar, tryptic soy agar or heart infusion agar. If the specimen is suspected to be contaminated it is plated on mannitol salt agar containing 7.5% sodium chloride.

Another test is production of thermostable deoxyribonuclease. S aureus can be confirmed by testing colonies for agglutination with latex particles coated with immunoglobulin G and fibrinogen which bind protein A and the clumping factor, respectively.

Microscopically cells occur singly and in pairs, short chains, and grape-like clusters. The cell wall of the bacteria contains teichoic acid. Ribitol teichoic acid (Polysaccharide A) is present in Staphylococcus aureus. Protein A uniformly coats surface of S. aureus and is usually oxidase negative.

INSTAGRAM
FACEBOOK 
TWITTER

23 Ekim 2018 Salı

Ekim 23, 2018

STAPHYLOCOCCUS SPP. (TÜRKÇE)

STAPHYLOCOCCUS SPP.

Staphylococcuslar hareketsiz, sporsuz, genellikle kapsülsüz, gram pozitif (+) bakterilerdir. Mikroskobik incelemede; yuvarlak koklardan oluşmuş Staphylococcus hücreleri, üreme sırasında birbirinden ayrılmayıp 3 boyut yönünde çoğaldıklarından üzüm salkımına benzer kümeler halinde görünür. 

Üreme Özellikleri 
Staphylococcuslar fakültatif anaerobdur. Optimal üreme ısıları 37oC, optimal pH'ları 7.27.4'tür. Kuruluğa, ısıya, çeşitli antiseptik ve dezenfektanlara birçok bakteriye göre daha  dayanıklıdır; ancak kristal viyole ve malaşit yeşili gibi boyalara hassastır. Adi besiyerinde kolay ürer. Bu besiyerlerine kan ve glikoz ilavesiyle bakterinin üremesi artar. Bu tür ortamlarda S tipi koloni oluşturur. Koloniler, üreme ortamında renkleri ile ayrıcalık gösterir ve bazı Staphylococcusların oluşturduğu pigmentin rengini alır. 
Staphylococcus aureus on Blood Agar

➤ İnsanlarda enfeksiyona neden olan başlıca Staphylococcus türleri şunlardır; 
➧ Staphylococcus aureus, en çok enfeksiyona neden olan patojen türüdür. 
➧ Staphylococcus epidermidis, üst solunum yolu ve derinin florasında bulunur; vücut direnci düştüğünde fırsatçı enfeksiyonlara neden olur. 
➧ Staphylococcus saprophyticus, normal florada bulunmaz. Vücut direnci düştüğünde başta üriner sistem enfeksiyonları olmak üzere fırsatçı enfeksiyonlara neden olur. 
Antijenik Özellikleri 
Staphylococcuslar, antijen yapıları bakımdan kesin bir özellik göstermez. Staphylococcus aureus'un tiplendirilmesinde faj tiplendirmesi kullanılır. Gerektiğinde serolojik tiplendirmelerden de yararlanılır. 
Staphylococcus aureus’un Toksin ve Enzimleri 
  • Hemolysin; eritrositleri hemoliz eden toksindir. 
  • Lökosidin; lökositleri öldürücü etki gösteren, fagositozu önleyen toksindir. 
  • Nekrotoksin; dokuları öldürücü etki gösteren toksindir. 
  • Fibronilizin; fibrini eritip bakteriyi hapsolmaktan kurtaran toksindir. 
  • Enterotoksin; besin zehirlenmesine neden olan toksindir 
  • Plazma koagülaz enzimi; pıhtılaşması önlenmiş kanın plazmasını pıhtılaştıran ve patojenliği gösteren bir enzimdir. 
  • Hyalüronidaz enzimi (yayılma faktörü); bakterinin doku içinde yayılmasını sağlayan enzimdir. 
  • Penisilinaz enzimi; penisilinin yapısını bozarak etkisini ortadan kaldıran enzimdir. 
  • Jelatinaz enzimi; jelatini eriten enzimdir. 

Yaptığı Hastalıklar 
➨Deri Enfeksiyonları; apse, fronkül (çıban), sivilce, impetigo (iltihaplı deri enfeksiyonu), kan çıbanı, hordeolum (arpacık), paronişya (dolama), yara, yanık ve cerrahi yara enfeksiyonları.  
➨Solunum Yolu Enfeksiyonları; anjin, akut veya kronik farenjit, sinüzit, otitis media, stafilokok pnömonisi. 
➨Ürogenital Sistem Hastalıkları; piyelonefrit, salpenjit, otitis media, endometrit, servisit, böbrek apseleri. 
➨Sinir Sistemi Hastalıkları; menenjit, artrit, osteomyelit, besin zehirlenmesi ve sepsis yapar. 

Laboratuvar Teşhisi  
İnceleme örnekleri: Balgam, cerahat, BOS, kan . 
Teşhis yöntemleri 
➧Mikrobiyolojik örneğin direkt mikroskobik incelemesi; direkt preparat hazırlanıp gram boyasıyla boyanarak mikroskopta incelenir. 
➧Kültür; kanlı agara ekim yapılarak üreyen bakterinin koloni ve hemoliz özellikleri incelenir. İzole edilen bir Staphylococcusun Staphylococcus aureus olup olmadığı; jelatinli besiyerine ve chapman besiyerine ekim yapılarak belirlenir. 
➧Biyokimyasal testler; katalaz ve koagülaz testleri yapılır. 

INSTAGRAM
FACEBOOK 
TWITTER

12 Ekim 2018 Cuma

Ekim 12, 2018

BLOOD AGAR

BLOOD AGAR PLATES

Blood agar is actually a couple of related media, all of which are rich formulations containing peptones, yeast extracts, liver or heart extracts (depending on the medium), and blood.  The blood is usually sheep's red blood cells (RBC), though horse and other species may be used.  Blood agar is used to grow fastidious organisms (species that do not grow easily) requiring a rich media providing many nutrients and growth factors that are largely supplied by blood.  It is also a differential media in allowing the detection of hemolysis (destroying the RBC) by cytolytic toxins secreted by some bacteria, such as certain strains of Bacillus, Streptococcus, Enterococcus, Staphylococcus, and Aerococcus. 

Blood agar plates are routinely used in the clinic to test for pathenogenic bacteria in throat swabs.  These throat pathogens are often Gram positive cocci that may be hemolytic, producing exotoxins called hemolysins that destroy blood cells.  One such pathogen that BAP can detect is Streptococcus pyogenes which causes a number of diseases including strep throat, rheumatic fever, and necrotizing fascitis.  


Aim of Test:  blood agar plates allow for the growth of fastidious organisms and the differentiation of cells according to three hemolytic activities:

The Three Types of Hemolytic Activities:
➤ a clear zone around bacterial growth -RBC hemolyzed completely (Beta-hemolysis and pathogenic)
➤ a greenish zone around growth -RBC partially hemolyzed (Alpha-hemolysis)
➤ no change around growth -blood is not hemolyzed (Gamma-hemolysis or no hemolysis)



Procedure for Testing an Unknown:
➧ The BAP test may be used to either test a throat culture or an unknown bacterial species for hemolytic activity.
➧ If an unknown species of bacteria is to be tested, divide a BAP plate in thirds.
➧ Inoculate one third with the unknown, one third with a negative control (such as E. coli), and one third with a positve control (such as Bacillus cereus).
➧ It is best to streak your bacteria in a long W pattern using your inoculating needle with plenty of space between the streak lines.  This will put some space between the streaks making it easier to observe the results.  If there is too much growth, which may happen with a swab, waste products may accumulate which may lyse the blood giving the appearance of hemolytic toxins when they are not actually present.
➧ If a candle jar is not available, take a needle and stab a region of heavy inoculation to inoculate bacteria under the agar surface.  This allows for growth of the bacteria under reduced oxygen.  If a candle jar is available (or some other means to reduce the oxygen), do not stab the plates and incubate them in a candle jar.  The cultures are put in the jar, a lit candle is added, the lid is put on tightly, the candle uses up most of the oxygen and goes out, and then the jar is incubated under reduced oxygen.).  Some hemolysins are oxygen sensitive, so the bacteria should be grown and tested under reduced oxygen.  Both the stab and the candle jar reduce the oxygen allowing for the the testing of oxygen sensitive hemolysins.  Oxygen stable hemolysins are not affected by either treatment.
➧ Incubate the plates for 24 hours at 35 degrees. 



Procedure for Testing a Throat Culture:
⇒ If using a throat culture, obtain a swab of the throat and inoculate it in a small area on a BAP plate.
⇒ It is not required but is a good idea to streak the rest of the plate with a loop to try to isolate colonies from the throat culture.  Alternatively, one may swab the entire plate with the throat culture.
⇒ If a candle jar is not available, take a needle and stab a region of heavy inoculation to allow anaerobic growth of the bacteria or at least growth with reduced oxygen.  Otherwise, do not bother with the stabbing and incubate appropriately labeled plates in a candle jar.  (See above.)
⇒ Incubate the plates for 24 hours at 35 degrees.


Results:
Observe your plates for hemolytic activity and record your results as alpha, beta, or gamma (α, β, γ).  Holding the plate up to a light source helps.

Instructor Notes:
Different types of blood (sheep versus horse, etc.) can affect the hemolytic activity of strains.  Optimal hemolytic activity occurs under reduced or anaerobic conditions, but this is often not required.  Hemolytic activity is much easier for students to read and interpret with the use of a candle jar compared to stabbing into the agar, so this method is recommended.  Over incubation of the plates may cause overgrowth which may cause waste products to accumulate which may lyse the blood giving the appearance of hemolytic toxins when they are not actually present.  Many enterics give false hemolytic activity when overgrown.  The plates can be refrigerated if needed to prevent over incubation.

INSTAGRAM

FACEBOOK 

TWITTER